³ò ^HNHc@sTddkTddkTddkTddkZddd„ƒYZddd„ƒYZdS( iÿÿÿÿ(t*NtImplicitFitnesscBs#eZd„Zd„Zd„ZRS(cCs ||_dS(N(tenv(tselfR((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyt__init__scCs|S(N((RR((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pytrunLoop scCs|i|iƒƒdS(N(t writeDatat recordData(RRtrecorder((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyR s(t__name__t __module__RRR(((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyRs  tExplicitFitnesscBsteZd„Zd„Zd„Zd„Zd„Zd„Zd„Zd„Z d„Z d „Z d „Z d „Z RS( cCsU||_d|_d|_g|_d|_d|_d|_g|_h|_dS(Ngš™™™™™¹?iiid( Rtkeept geneCounttgenest geneIndextrunStepst generationttimestdata(RR((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyRs        cCsÊdGH|it|iƒ}d|iGH|id7_g}xxtd|ƒD]g}t|iƒdjo5|itidt|iƒƒi|ii ƒ}n t ƒ}|i |ƒqLW|i|7_dS(Ntseeds generation %dii( R tlenRRtrangetrandomt randrangetmutateRt mutationRatetRandomVectorGenetappend(Rtneedtnewbiestitgene((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyRs 5 cCs|i|iS(N(RR(R((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pytcurrGene-scCs:|id7_|it|iƒjodSn|iƒS(Ni(RRRtNoneR!(R((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pytnextGene0scs†|iƒg|_x9tdˆiiƒD]"}t|ƒ}|ii|ƒq)Wt|_t|_ gˆ_ ‡fd†}||_ |S(Nicsˆii|iƒdS(N(RRtt(tparticle(R(sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pytremovedParticleKs( tresett particlesRRt maxPopulationtParticleRtFalsetfixedPopulationt reproduceRR&(RR RRtpR&((RsM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pytsetupEnvironment7s       cCs+x$|iD]}|ii|iƒq WdS(N(R(RRR$(RRR.((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pytteardownEnvironmentSs cCst|iƒiƒ}|S(N(tarrayRtmean(Rtfitness((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyt rateFitnessYscCst|i|iƒS(N(tcmpR3(Rtatb((sM/Users/shane/school/Davis/PHY 150 - Special Topics/project/ExplicitFitness.pyt compareGenes]scCsÆdGH|ii|iƒ|iiƒttttdƒ|iƒƒ}|iƒ}dt |ƒGHd|GH||i d<|i ƒ|i ds